Computational biology packages for Go, with emphasis on minimialism.

go get github.com/fluhus/biostuff/...

Another computational biology library?

Well… Yes. Every library puts its emphasis on a certain audience and certain use cases.

This one is optimized for API simplicity. It helps those who need quick, straightforward solutions where they are not required to learn new concepts. It is also optimized for performance, as long as the optimization does not complicate the API.

Package overview

• Data formats
  • bed
  • fasta
  • fastq
  • newick
  • sam
• Nucleotide & amino-acid sequence utilities
  • sequtil
• Algorithms & data structures
  • align sequence alignment logic
  • regions an index for interval (genes, etc.) overlap lookup
  • trie a prefix tree for sequence lookups

Help or get help

Found a bug? Got feedback? Questions? Feel free to open an issue and let me know!